Package index
-
AddMisc() - Safely Add Miscellaneous Data to Seurat Object
-
BulkPreProcess() - Bulk RNA-seq Data Preprocessing and Quality Control Function
-
DoDEGAS() - Run DEGAS Analysis for Single-Cell and Bulk RNA-seq Data Integration
-
DoScissor() - Perform Scissor Screening Analysis
-
DoscAB() - Perform scAB Screening Analysis
-
DoscPAS() - Perform scPAS Screening Analysis
-
DoscPP() - Perform scPP screening analysis
-
FindRobustElbow() - Automatically determine optimal PCA dimensions using multiple robust methods
-
ListPyEnv() - List Available Python Environments
-
LoadRefData() - Download & Load Reference Data
-
MergeResult() - Merge Multiple Screening Analysis Results
-
SCPreProcess() - Single-Cell RNA-seq Preprocessing Pipeline
-
Screen() - Single-Cell Data Screening
-
ScreenFractionPlot() - Visualization of Cell Screening Fractions
-
ScreenUpset() - ScreenUpset - Visualize cell type intersections from screened Seurat object
-
SetupPyEnv() - Create or Use Python Environment with Required Packages
-
SetupPyEnv(<conda>) - Setup Conda Python Environment
-
SetupPyEnv(<venv>) - Setup Virtual Environment (venv)
-
SymbolConvert() - Convert Ensembles Version IDs & TCGA Version IDs to Genes in Bulk Expression Data