Perform Scissor Reliability Test

Performs reliability testing for Scissor results to assess the stability and robustness of identified phenotype-associated cells.

Usage

DoScissorRelTest(
  scissor_res,
  alpha,
  family,
  cell_num = length(scissor_res$Scissor_pos) + length(scissor_res$Scissor_neg),
  n = 10L,
  nfold = 10L,
  verbose = getFuncOption("verbose"),
  ...
)

Arguments

scissor_res

Scissor results from Scissor

alpha

Alpha parameter used in Scissor, a scalar value between 0 and 1

family

Model family used in Scissor, one of "gaussian", "binomial", "cox"

cell_num

Number of cells identified by Scissor

n

Permutation times (default: 10L)

nfold

Cross-validation folds (default: 10L)

verbose

Whether to show progress messages (default: TRUE)

...

No used parameters

Value

Reliability test results including statistics and p-values

See also

Other scissor: DoScissor(), DoScissorCellEval()