Cluster and reduce dimensions (internal)

FindNeighbors, FindClusters, RunTSNE, RunUMAP

Usage

ClusterAndReduce(obj, dims = NULL, resolution = 0.6, verbose = TRUE)

Arguments

obj

Seurat object

dims

Dimension to use for clustering and dimension reduction

resolution

Resolution for clustering

verbose

logical, whether to print progress messages

Value

Seurat object

See also

Other single_cell_preprocess: FilterTumorCell(), FindRobustElbow(), ProcessSeuratObject(), QCPatternFilter()