scAB_data preprocess — create_scAB.v5 • SigBridgeR

preprocess the single-cell data, bulk data, and phenotype data.

Usage

create_scAB.v5(
  Object,
  bulk_dataset,
  phenotype,
  method = c("survival", "binary"),
  verbose = TRUE,
  ...
)

Arguments

Object: Seurat object
bulk_dataset: matrix of bulk data
phenotype: Phenotype data, a matrix with two columns "time" and "state", or a vector
method: method "survival" or "binary"
verbose: Logical, whether to print messages.
...: For future updates.

Value

a scAB_data

See also

Other scAB: DoscAB(), NMF.optimized(), findSubset.optimized(), scAB.optimized(), select_K.optimized()