Package index
GEO Database operations
This category includes functions for retrieving and handling metadata from GEO datasets. It allows users to search for GEO entries and retrieve detailed information about them, including formats and supplementary data, to support further analysis.
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geo_search() - Search GEO database
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geo_meta() - Get the metadata of multiple GEO identities
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geo_soft() - Retrieve GEO SOFT file from NCBI GEO
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geo_matrix() - Retrieve Series Matrix and Create ExpressionSet
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geo_suppl() - Get Supplemental Files from GEO
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geo_url() - GEO URL resolver
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geo_gtype() - GEO accession type
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geo_show() - Open the GEO landing page in a browser
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parse_sample_data() - Parse key-value pairs in the metadata of GEO Sample SOFT file
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log_trans() - Apply log2 Transformation to Expression Data