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Changelog

Source: NEWS.md

blit (development version)

  • Rename cmd_conda to cmd_codnaenv().

  • new command fastp

  • new command varscan

  • new command bcftools

  • new command snpEff

  • new command bowtie2

  • new command bwa

  • new command bedtools

blit 0.2.0

CRAN release: 2025-03-29

New features

  • new function cmd_conda to define the PATH environment variables with conda environment.

  • new function appmamba to install software and manage Environment with micromamba.

  • new function cmd_on_fail to define the expression to be evaluated when the command failed.

  • new function cmd_on_succeedto define the expression to be evaluated when the command succeeded.

  • new function cmd_on_start() to define the expressions which will be run when command started

  • new function cmd_on_exit() to define the expressions which will be run when command finished

  • new command samtools

  • new function cmd_parallel() to run multiple commands meanwhile

  • use processx package to execute the command and remove the sys and withr package from dependencies

blit 0.1.0

CRAN release: 2025-02-27

  • Initial CRAN submission.