Single cells in the 2D embedding colored by clone identity – the spatial analogue of the paper's Extended Data Fig. 8a, showing at a glance which transcriptional subclones sit where.
Usage
plot_clone_umap(
tsne_data,
clone_col = "clone_id",
title = NULL,
color_label = "Clone",
point_size = NULL,
base_size = 11,
tooltip = TRUE,
tooltip_col = NULL
)Arguments
- tsne_data
Data frame with columns: X, Y, and the clone column.
- clone_col
Character. Name of the column holding clone ids. Default = "clone_id".
- title
Character. Plot title. Default = NULL.
- color_label
Character. Legend label. Default = "Clone".
- point_size
Numeric. Point size. If NULL (default), auto-adapts to the number of cells to avoid overplotting.
- base_size
Numeric. Base font size. Default = 11.
- tooltip
Logical. If TRUE (default) and ggiraph is installed, points get hover tooltips (clone id).
- tooltip_col
Character. Optional existing column used as the tooltip text. Default = NULL (auto-builds from the clone id).