This dataset contains less records than data("pcawg_full") but
with more ID columns. Of note, only white-list donors included.
Examples
# \donttest{
load_data("pcawg_simple")
#> tumour_specimen_aliquot_id normal_specimen_aliquot_id
#> <char> <char>
#> 1: 0009b464-b376-4fbc-8a56-da538269a02f 5ef2ed4d-464e-4a51-95e0-401d9ae7be86
#> 2: 003819bc-c415-4e76-887c-931d60ed39e7 9a1c7950-69c9-4f27-800c-8bd834bc3d08
#> 3: 0040b1b6-b07a-4b6e-90ef-133523eaf412 64d942b9-eb38-4c98-8999-4b682377ee85
#> 4: 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10
#> 5: 00508f2b-36bf-44fc-b66b-97e1f3e40bfa a3cc9015-6131-417c-8b71-e6028a4646bd
#> ---
#> 2579: ff870342-f0d6-4450-8f9c-344c046a0baf 8d6563a5-9777-4b2a-a4ac-00b59e6729ff
#> 2580: ffa976f0-aa60-4867-842e-361afa7d68ac 36021aee-1b89-4d5d-94a8-6b9db44a4448
#> 2581: ffad9288-c622-11e3-bf01-24c6515278c0 ff27bf50-c622-11e3-bf01-24c6515278c0
#> 2582: ffdd4feb-aca3-4104-b1e8-954d705a6450 db3bb39b-a1a6-49af-aae3-7cb489a724e4
#> 2583: ffe4bb51-e98a-41a7-a4e1-c3970386889c 15c19e49-6f79-4a67-ab31-3075f38c8432
#> donor_unique_id submitted_donor_id
#> <char> <char>
#> 1: OV-AU::AOCS-117 AOCS-117
#> 2: PBCA-DE::ICGC_PA107 ICGC_PA107
#> 3: LINC-JP::HX17 HX17
#> 4: LGG-US::fc3b7596-f515-446f-81db-fed0154ca2c5 TCGA-EZ-7264
#> 5: PAEN-AU::ICGC_0498 ICGC_0498
#> ---
#> 2579: PRAD-CA::CPCG0208 CPCG0208
#> 2580: CLLE-ES::151 151
#> 2581: LIRI-JP::RK172 RK172
#> 2582: BLCA-US::cce62116-3dcd-400d-ada0-9839ca02466e TCGA-FT-A3EE
#> 2583: PACA-CA::PCSI_0326 PCSI_0326
#> icgc_donor_id icgc_sample_id icgc_specimen_id submitted_specimen_id
#> <char> <char> <char> <char>
#> 1: DO46416 SA505245 SP101724 AOCS-117-13
#> 2: DO36062 SA413814 SP79365 ICGC_PA107
#> 3: DO45049 SA501385 SP98853 HX17T
#> 4: DO22145 SA262459 SP47708 TCGA-EZ-7264-01A
#> 5: DO48578 SA514933 SP106808 8068611
#> ---
#> 2579: DO51079 SA530530 SP112845 CPCG0208-F1
#> 2580: DO52704 SA542175 SP116740 151-02-8TD
#> 2581: DO23552 SA270468 SP50185 RK172_C01
#> 2582: DO720 SA4138 SP1491 TCGA-FT-A3EE-01A
#> 2583: DO51503 SA533736 SP125738 PCSI_0326_Pa_P_526
#> submitted_sample_id tcga_specimen_uuid
#> <char> <char>
#> 1: AOCS-117-3-3 <NA>
#> 2: ICGC_PA107 <NA>
#> 3: HX17T <NA>
#> 4: TCGA-EZ-7264-01A-11D-2024-08 eecba415-5517-4265-8944-07aacbc679fb
#> 5: 8068611 <NA>
#> ---
#> 2579: CPCG0208-F1 <NA>
#> 2580: 151-02-8TD <NA>
#> 2581: RK172_C01 <NA>
#> 2582: TCGA-FT-A3EE-01A-11D-A202-08 2356f78c-0653-468f-83db-6cf6107bd259
#> 2583: PCSI_0326_Pa_P_526 <NA>
#> tcga_sample_uuid tcga_donor_uuid
#> <char> <char>
#> 1: <NA> <NA>
#> 2: <NA> <NA>
#> 3: <NA> <NA>
#> 4: 00493087-9d9d-40ca-86d5-936f1b951c93 fc3b7596-f515-446f-81db-fed0154ca2c5
#> 5: <NA> <NA>
#> ---
#> 2579: <NA> <NA>
#> 2580: <NA> <NA>
#> 2581: <NA> <NA>
#> 2582: ffdd4feb-aca3-4104-b1e8-954d705a6450 cce62116-3dcd-400d-ada0-9839ca02466e
#> 2583: <NA> <NA>
# }