Convert ICGC Identifiers — convert_icgc • IDConverter

Run data("icgc") to see detail database for conversion.

Usage

convert_icgc(
  x,
  from = "icgc_specimen_id",
  to = "icgc_donor_id",
  multiple = FALSE
)

Arguments

x: A character vector to convert.
from: Which identifier type to be converted. One of icgc_sample_id, submitted_sample_id, icgc_specimen_id, submitted_specimen_id, icgc_donor_id, submitted_donor_id.
to: Identifier type convert to. Same as parameter from.
multiple: if TRUE, return a data.table instead of a string vector, so multiple identifier mappings can be kept.

Value

A character vector.

Examples

# \donttest{
x <- convert_icgc("SP29019")
x
#> [1] "DO13695"
# }
if (FALSE) { # \dontrun{
convert_icgc("SA170678")
} # }